Peer-reviewed papers:

Strobl MAR, Barker D (2016) On simulated annealing phase transitions in phylogeny reconstruction. Molecular Phylogenetics and Evolution, 101, 46-55.

Barker, D (2004) LVB: parsimony and simulated annealing in the search for phylogenetic trees. Bioinformatics, 20, 274-275.
This paper has supplementary information.


Kim CS, Wynn M, Pinheiro M, Barker D, Strobl M, Meagher T (2015) Using HPC to deduce the tree of life. In: Science Highlights 2014-2015: Scientific Computing Department. Science and Technology Facilities Council, pp. 4-6.